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Old 07-07-2011, 12:53 AM   #1
stoker
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Location: Poland

Join Date: Oct 2010
Posts: 17
Default Fastq sorting and common part?

Dear community,
I have 3 huge fastq files for paired end multiplexed read:
I would like to extract from them the common part, so clusters for which I have both reads and multiplexing index. I would like also to have the reads sorted in the same order in all the files.
Do you suggest any software that could help me with it?
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