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Old 05-01-2012, 11:08 PM   #1
oxydeepu
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Location: bangalore,india

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Default ChIP-Seq Peak Calling tools

Hi all,

Is there any tools to study the ChIP-Seq peak calling tools which can be used without a control sample.

Thank you
cheers
deepak
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Old 05-02-2012, 12:38 AM   #2
kopi-o
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Yes, there are many, but it's much better to have a control sample.

Still, if you are stuck without one, you could start by looking at e.g. SISSRs or MACS.
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Old 05-02-2012, 01:14 AM   #3
oxydeepu
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Thanks alot kopi-o..

I will try using them.

cheers
deepak
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Old 01-18-2013, 01:42 AM   #4
soban
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Dear All,
I am a learner in Bioinformatics, i am running SNP -Calling through GATK Tool kit. i have set of SNPs , which i want to locate now in my genome (Ptrichocarpa), would anybody tell me please, which tool is the best for this process.
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