hi all
I would like to know why the variant below is filtered when I use the default parameters with vcfutils.pl varFilter.
CFA18 1805 . A T 99 . DP=3421;AF1=0.5;CI95=0.5,0.5;DP4=327,962,694,1438;MQ=18;PV4=9.1e-06,0.00032,0.005,2.4e-06 PLP:SP:GT:GQ 255,0,219:805:8:0/1:99 108,0,174:681:19:0/1:99 101,0,163:671:28:0/1:99 213,0,142:1264:12:0/1:99
Thank you very much for your answers
Vidhya
I would like to know why the variant below is filtered when I use the default parameters with vcfutils.pl varFilter.
CFA18 1805 . A T 99 . DP=3421;AF1=0.5;CI95=0.5,0.5;DP4=327,962,694,1438;MQ=18;PV4=9.1e-06,0.00032,0.005,2.4e-06 PLP:SP:GT:GQ 255,0,219:805:8:0/1:99 108,0,174:681:19:0/1:99 101,0,163:671:28:0/1:99 213,0,142:1264:12:0/1:99
Thank you very much for your answers
Vidhya