Hello,
I just started to use samtools to call SNPs on some target regions for crop wheat, should I sort the .bed file by chromosomes and start and end Or samtools accept unsorted .bed file so that chr has to be in order, as well as start and end positions from small to large?
eg, my bed file looks like:
chr1 2345 34565
chr1 3455 65421
chr1 23455 23299
thank you,
lifetech01
I just started to use samtools to call SNPs on some target regions for crop wheat, should I sort the .bed file by chromosomes and start and end Or samtools accept unsorted .bed file so that chr has to be in order, as well as start and end positions from small to large?
eg, my bed file looks like:
chr1 2345 34565
chr1 3455 65421
chr1 23455 23299
thank you,
lifetech01
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