Hi
I am trying to run SOAP on a Mac Pro 2 × quad-core 2.8 GHz machine. When I try to run soap I get the following error:
>soap -a reads.fastq -d ref.txt -o soap.out
Start at: Mon Aug 11 13:51:22 2008
Load in 1 db seqs, total size 117080 bp. 0 secs passed
total_kmers: 1048576
Create seed table. 0 secs passed
Single read alignment:
Query: reads.fastq Reference: ref.txt Output: soap.out
Segmentation fault
I have emailed with the SOAP authors and was told that SOAP cannot be run on my machine because it's only 32 bit and that I should try it on a 64 bit machine. But I'm fairly certain the new Mac Pros are 64 bit - and I don't have access to another machine. I have been playing around with the -arch in the makefile but haven't found an option that solves my problem.
Has anyone experienced a similar problem and found a way around it?
I am trying to run SOAP on a Mac Pro 2 × quad-core 2.8 GHz machine. When I try to run soap I get the following error:
>soap -a reads.fastq -d ref.txt -o soap.out
Start at: Mon Aug 11 13:51:22 2008
Load in 1 db seqs, total size 117080 bp. 0 secs passed
total_kmers: 1048576
Create seed table. 0 secs passed
Single read alignment:
Query: reads.fastq Reference: ref.txt Output: soap.out
Segmentation fault
I have emailed with the SOAP authors and was told that SOAP cannot be run on my machine because it's only 32 bit and that I should try it on a 64 bit machine. But I'm fairly certain the new Mac Pros are 64 bit - and I don't have access to another machine. I have been playing around with the -arch in the makefile but haven't found an option that solves my problem.
Has anyone experienced a similar problem and found a way around it?
Comment