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Old 07-08-2011, 03:50 PM   #1
Alexander Tchourbanov
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Location: Las Cruces, NM

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Default Microsatellites development with Next G. seq + Illumina transcriptome analysis

Dear colleagues, I have implemented two software packages. HighSSR framework can significantly simplify development of the microsatellites (SSR) markers from the next generation sequencing reads (especially from Roche 454 GS-FLX raw reads because they are longer). The other package is for Illumina RNA-Seq transcriptome analysis in case/control studies. These are freely available from here http://maximusinuse.nmsu.edu. Please let me know your opinion about these developments, we will submit corresponding method papers for review shortly.
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Old 09-04-2012, 09:44 PM   #2
edge
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Hi,

The link can't open?
Do you mind to share more regarding SSR?
I'm still quite blur regarding finding SSR in transcriptome data set
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Old 10-07-2012, 05:42 PM   #3
Alexander Tchourbanov
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HighSSR project is available at http://code.google.com/p/highssr/
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