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Old 08-09-2012, 12:58 PM   #1
yuhao
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Default Recommendation for CNV detection software in Illumina WGS data for cancer cells

Can anyone recommend some reliable software for CNV detection in cancer cells for Illumina WGS data?
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Old 08-10-2012, 12:49 AM   #2
stefanoberri
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Hi

I am the developer of CNAnorm which is designed for normalisation, segmentation, GC correction and plotting of copy number data from very low coverage (~ 0.05X) whole genome sequencing. It also works with higher coverage (obviously takes more time and you will need a few tweeks) and some report using it sucesfully on exome capture data.

Please read this post where other users posted their questions and I provided some suggestions.

good luck
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Old 08-11-2012, 09:59 AM   #3
yuhao
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Hi, stefanoberri, I am not able to access the paper for CNAnorm, could you mind to send me the paper in mailbox: hhhyyyccc@gmail.com? I appreciate it !
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Old 08-15-2012, 07:22 AM   #4
stefanoberri
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Hi, sorry for the late reply.

Here you can find the preprint of the article and the supplemental material

Last edited by stefanoberri; 08-15-2012 at 08:47 AM.
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Old 08-15-2012, 08:42 AM   #5
yuhao
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I am not able to open the link, could you send the article to me in : hhhyyyccc@gmail.com
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