SEQanswers

Go Back   SEQanswers > Applications Forums > Epigenetics



Similar Threads
Thread Thread Starter Forum Replies Last Post
ChIP-seq peak caller that handles biological replicates AnnaE Bioinformatics 6 05-13-2015 12:49 PM
MeDIP-seq peak calling (with replicates) dpryan Bioinformatics 5 10-20-2014 09:09 AM
ChIP-seq peak calling from replicates ttnguyen Bioinformatics 4 08-10-2011 01:21 AM

Reply
 
Thread Tools
Old 10-21-2013, 04:04 PM   #1
pmad
Bioinformatics Engineer
 
Location: University of Cambridge, UK

Join Date: Jun 2010
Posts: 14
Default CexoR: peak-pair calling in ChIP-exo data with replicates

Dear bioinformatics community,

If you are producing of analyzing ChIP-exo data (Rhee HS, Pugh BF, 2011, Cell 147:1408-19) with replicates, you might want to consider CexoR to uncover high-resolution protein-DNA interactions. It processes data data in BAM aligment format. Devel version is
at: http://bioconductor.org/packages/dev...tml/CexoR.html


Best regards,
Pedro Madrigal

Research Associate
Wellcome Trust Sanger Institute
Wellcome Trust Genome Campus
Hinxton,
Cambridge, CB10 1SA
UK
__________________
Pedro Madrigal
pmad is offline   Reply With Quote
Reply

Tags
chip-exo, chip-seq, chip-seq analysis

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 02:14 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO