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Old 08-28-2013, 02:20 AM   #1
ebioman
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Location: Switzerland

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Default Scaffold evaluation measures

Hello,

I want to compare the scaffolding of different assemblies and looking for good measures to evaluate the quality.
  1. N 50
  2. NG 50
  3. Blastx and evaluate how many align
  4. ...

Was my previous approach, now I am seeking new ones. The biggest obstacle using other methods of evaluation often is the lack of a reference genome in my case.

Any good suggestions ?
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Old 08-29-2013, 02:37 AM   #2
flxlex
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Have a look here: http://flxlexblog.wordpress.com/2013...athon2-debate/. More are appearing in the literature all the time...
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