Go Back   SEQanswers > Sequencing Technologies/Companies > Illumina/Solexa

Similar Threads
Thread Thread Starter Forum Replies Last Post
Trying to identify low coverage regions (bases) in my sample from a Bam and BED file. pfeifferr Bioinformatics 4 03-24-2014 11:22 AM
Percent/Fraction/Number of Bases vs. Read Depth plots - How to generate ? medalofhonour Bioinformatics 1 01-14-2013 04:19 AM
Counting coverage bases batsal Bioinformatics 0 02-17-2012 10:46 AM
Average Read Coverage for 454 paired end read data lisa1102 Core Facilities 8 10-18-2011 08:40 AM
Determining the number of bases and percent coverage in an aligned sequence kz26 Bioinformatics 0 06-28-2010 08:22 PM

Thread Tools
Old 02-05-2015, 11:30 AM   #1
Location: earth!

Join Date: Oct 2013
Posts: 15
Default How can I get all bases with read coverage of at least three?

I want to get all bases (coordinates of chromosomes) with read coverage of at least 3. Is there an easy way to figure it out? Which software would be recommended to use? Thanks a lot.
hugomarquez is offline   Reply With Quote
Old 02-05-2015, 11:34 AM   #2
Senior Member
Location: East Coast USA

Join Date: Feb 2008
Posts: 6,966
GenoMax is online now   Reply With Quote


Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 09:02 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2019, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO