Seqanswers Leaderboard Ad

Collapse

Announcement

Collapse
No announcement yet.
X
 
  • Filter
  • Time
  • Show
Clear All
new posts

  • Glimmer3

    Hey there,

    I am currently using the newest version of Glimmer, Glimmer3.02. When running the g3-iterated-viral.csh script I get the "Failed to run Glimmer3" error at step 8 (glimmer3 also runs at step 4 and it worked just fine). The terminal reads "Segmentation fault (core dumped)". More specifically:

    .
    .
    .Analyzing Sequence #9046
    Start Find_Orfs
    Start Score_Orfs
    Start Process_Events
    Start Trace_Back
    Analyzing Sequence #9047
    Start Find_Orfs
    Start Score_Orfs
    Segmentation fault (core dumped)

    Some people suggest this has something to with glimmer3 not being able to access some memory (like a permission thing? this is unlikely because everything has rw permissions in my directory).... I'm sort of just lost at this point and am posting everywhere asking for help. Please help!!!!

  • #2
    Core dump shows:

    Program terminated with signal 11, Segmentation fault.
    #0 0x000000000041fd5e in Complement (ch=-48 '\320') at gene.cc:531

    Comment

    Latest Articles

    Collapse

    • seqadmin
      Current Approaches to Protein Sequencing
      by seqadmin


      Proteins are often described as the workhorses of the cell, and identifying their sequences is key to understanding their role in biological processes and disease. Currently, the most common technique used to determine protein sequences is mass spectrometry. While still a valuable tool, mass spectrometry faces several limitations and requires a highly experienced scientist familiar with the equipment to operate it. Additionally, other proteomic methods, like affinity assays, are constrained...
      04-04-2024, 04:25 PM
    • seqadmin
      Strategies for Sequencing Challenging Samples
      by seqadmin


      Despite advancements in sequencing platforms and related sample preparation technologies, certain sample types continue to present significant challenges that can compromise sequencing results. Pedro Echave, Senior Manager of the Global Business Segment at Revvity, explained that the success of a sequencing experiment ultimately depends on the amount and integrity of the nucleic acid template (RNA or DNA) obtained from a sample. “The better the quality of the nucleic acid isolated...
      03-22-2024, 06:39 AM

    ad_right_rmr

    Collapse

    News

    Collapse

    Topics Statistics Last Post
    Started by seqadmin, 04-11-2024, 12:08 PM
    0 responses
    18 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-10-2024, 10:19 PM
    0 responses
    22 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-10-2024, 09:21 AM
    0 responses
    16 views
    0 likes
    Last Post seqadmin  
    Started by seqadmin, 04-04-2024, 09:00 AM
    0 responses
    46 views
    0 likes
    Last Post seqadmin  
    Working...
    X