Hello!
I am trying to compile bcl2fastq on a server where I cannot be root and should be installed in a specific folder (server is under CentOS 6.5).
I followed the manual's insctructions.
First I downloaded the tarball:
Then created some variables:
Then I extracted the files:
Then I ran the configuration:
But at this step I encounter an error, at 93% of the compilation :
Do you have any idea to solve the problem?
Cheers!
I am trying to compile bcl2fastq on a server where I cannot be root and should be installed in a specific folder (server is under CentOS 6.5).
I followed the manual's insctructions.
First I downloaded the tarball:
Code:
wget ftp://webdata:[email protected]/Downloads/Software/bcl2fastq/bcl2fastq-1.8.4.tar.bz2
Code:
export TMP=/tmp export SOURCE=${TMP}/bcl2fastq-1.8.4 export BUILD=${TMP}/bcl2fastq-1.8.4-build export INSTALL=/software/bcl2fastq/bcl2fastq-1.8.4
Code:
cd ${TMP} tar xjf /software/bcl2fastq/bcl2fastq-1.8.4.tar.bz2 mv bcl2fastq bcl2fastq-1.8.4
Code:
mkdir ${BUILD} cd ${BUILD} ${SOURCE}/src/configure --prefix=${INSTALL}
Code:
Linking CXX executable ../bin/ccmake /software6/apps/buildtools/20140527/bin/ld: CMakeFiles/ccmake.dir/CursesDialog/cmCursesMainForm.o: undefined reference to symbol 'keypad' /lib64/libtinfo.so.5: error adding symbols: DSO missing from command line
Cheers!
Comment