hello, everyone! I am a new member here.
Recently, I am working with the bacterial RNA-SEQ data. My data was in strand-specific PE reads fq file. I have mapped them onto the reference genome sequence and have got the sorted and indexed bam file. Nextly,
I want to make a differential gene expression analysis. So, I want to know what tools is recommended by the hands-on. DEseq, EdgeR, Cuffdiff or any other one, which is better?
Any opinions or Suggestions will be appreciated. Thank you!
Recently, I am working with the bacterial RNA-SEQ data. My data was in strand-specific PE reads fq file. I have mapped them onto the reference genome sequence and have got the sorted and indexed bam file. Nextly,
I want to make a differential gene expression analysis. So, I want to know what tools is recommended by the hands-on. DEseq, EdgeR, Cuffdiff or any other one, which is better?
Any opinions or Suggestions will be appreciated. Thank you!
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