Hello all,
I am using LTR_STRUC to retrive the LTR_retrotransposons from the genome. In *.rprt.txt output, it has been specified in RT region as "(Active site located in the lower left of frame 1)". My question is if the active site is located in the frame 1, then shall I consider frame 1 as the possible RT sequence out of the three frames?
Please help me with your suggestions!!!
Thank you
I am using LTR_STRUC to retrive the LTR_retrotransposons from the genome. In *.rprt.txt output, it has been specified in RT region as "(Active site located in the lower left of frame 1)". My question is if the active site is located in the frame 1, then shall I consider frame 1 as the possible RT sequence out of the three frames?
Please help me with your suggestions!!!
Thank you