hi all,
i'm trying to create a wig file in the following format:
track format=wiggle_0
variableStep chrom=2-micron span=1
1340 1
1341 1
where the left column represents a read start position and the right column represents the number of reads that start at that position. it is basically a frequency table that shows how many reads start at one position.
is there an easy way to create this kind of file from .bowtie or .sam/.bam output? any help would be appreciated!
i'm trying to create a wig file in the following format:
track format=wiggle_0
variableStep chrom=2-micron span=1
1340 1
1341 1
where the left column represents a read start position and the right column represents the number of reads that start at that position. it is basically a frequency table that shows how many reads start at one position.
is there an easy way to create this kind of file from .bowtie or .sam/.bam output? any help would be appreciated!
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