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Old 09-06-2009, 01:20 AM   #1
Location: shanghai, chia

Join Date: Mar 2009
Posts: 67
Unhappy blast puzzle

When I ran the blast with the parameter of "-b 1 -v 1", the result still had several subjects. This puzzle has puzzled me long time.
anyone1985 is offline   Reply With Quote
Old 09-06-2009, 02:45 AM   #2
Location: uk

Join Date: Dec 2008
Posts: 51

It could be that you're getting multiple hsp's for the same hit. You're restricting it to 1 hit and 1 alignment, but each hit can have multiple hsps, although I'm not sure how to restrict that, if it's even possible at all (I'm sure someone more knowledgeable than me will have the answer to that!).
rglover is offline   Reply With Quote

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