need suggestions for PGM QC data

cybog337 · 11-11-2013, 06:40 AM

Hi all,

This is Andrew and need any suggestions against attached seq QC data.

Recently, I got cancer panel service from a company, and I found that seq process was not good.

If the quality of seq data is fine and suitable for finding somatic mutation, I will use this.
But not, I will request re-run of my sample.

My opinion is this data is not good and it is better to do re-run, and any opinion is welcome.

Hope many suggestion and best reagards,

cybog337,

snetmcom · 11-17-2013, 05:07 PM

That is not an ideal run, but it looks like you have enough reads for most of the samples. I would only run again if you need more coverage.

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11-11-2013, 06:40 AM	#1
cybog337 Junior Member Location: RTP Join Date: Jul 2010 Posts: 8	need suggestions for PGM QC data Hi all, This is Andrew and need any suggestions against attached seq QC data. Recently, I got cancer panel service from a company, and I found that seq process was not good. If the quality of seq data is fine and suitable for finding somatic mutation, I will use this. But not, I will request re-run of my sample. My opinion is this data is not good and it is better to do re-run, and any opinion is welcome. Hope many suggestion and best reagards, cybog337, Last edited by cybog337; 11-11-2013 at 04:34 PM.

11-17-2013, 05:07 PM	#2
snetmcom Senior Member Location: USA Join Date: Oct 2008 Posts: 158	That is not an ideal run, but it looks like you have enough reads for most of the samples. I would only run again if you need more coverage.