We have gotten access approval for some TCGA data, but how do I find them? I have GeneTorrent (gtdownload and cgquery) installed, but it seems mightily difficult to find anything I'm looking for.
For instance, I'm trying to download a couple of data sets from TCGA's lung adenocarcinoma studies: http://www.sciencedirect.com/science...92867412010616
"The dbGAP accession number for the data reported in this paper is phs000488.v1.p1."
The dbGAP page can be found here: http://www.ncbi.nlm.nih.gov/projects...hs000488.v1.p1
cgquery "study=phs000488" returned zero result, as is the case for pretty much all the accession numbers I've found in any paper.
I downloaded some supplementary files from the article's website, but couldn't identify any of the Patient ID in the cghub's data manifest file, e.g., http://www.broadinstitute.org/pubs/l...UAD-5V8LT.html
So....... does anyone know actually how to find the data set you're looking for?
Thanks.
For instance, I'm trying to download a couple of data sets from TCGA's lung adenocarcinoma studies: http://www.sciencedirect.com/science...92867412010616
"The dbGAP accession number for the data reported in this paper is phs000488.v1.p1."
The dbGAP page can be found here: http://www.ncbi.nlm.nih.gov/projects...hs000488.v1.p1
cgquery "study=phs000488" returned zero result, as is the case for pretty much all the accession numbers I've found in any paper.
I downloaded some supplementary files from the article's website, but couldn't identify any of the Patient ID in the cghub's data manifest file, e.g., http://www.broadinstitute.org/pubs/l...UAD-5V8LT.html
So....... does anyone know actually how to find the data set you're looking for?
Thanks.
Comment