Hello,
Does any one know of a (free) software that is able to normalize aligned NGS data of different samples (e.g. in .bam format) to enable comparison of their read distribution profile across a reference sequence? That is, I want to compare not only the distribution profile of reads mapped onto the reference but also compare their relative abundance to one another, simultaneously.
I've tried Integrated genome viewer, but would like to try other software as well.
Thanks for any information!
Ken
Does any one know of a (free) software that is able to normalize aligned NGS data of different samples (e.g. in .bam format) to enable comparison of their read distribution profile across a reference sequence? That is, I want to compare not only the distribution profile of reads mapped onto the reference but also compare their relative abundance to one another, simultaneously.
I've tried Integrated genome viewer, but would like to try other software as well.
Thanks for any information!
Ken
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