After i run command like this:
python stampy.py -g hg19 -h hg19 --solexa --bwaoptions="-q10 hg19.fa " -o quick.sam --bwatmpdir=./tmp -M fq_1.gz fq_2.gz
I got the error message:
stampy: Error: Executing 'bwa aln -q10 hg19.fa ./tmp/tmpbwacxNokd.fq' exits with returncode -6
Could anybody tell me where the problem is ? and how to solve it?
Thank you very much
python stampy.py -g hg19 -h hg19 --solexa --bwaoptions="-q10 hg19.fa " -o quick.sam --bwatmpdir=./tmp -M fq_1.gz fq_2.gz
I got the error message:
stampy: Error: Executing 'bwa aln -q10 hg19.fa ./tmp/tmpbwacxNokd.fq' exits with returncode -6
Could anybody tell me where the problem is ? and how to solve it?
Thank you very much
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