Tried to view AMOS.afg file (37.1 GB) using a couple of programs. Tablet is painfully slow, but it eventually quit reporting error in some line. Hawkeye (AMOS package) successfully imported assembly in bank. and even opened graphic window showing contig 1, but then hung forever and has to be killed.
What viewer can be used to view assembly?
Code:
[yaximik@G5NNJN1 ~]$ hawkeye START DATE: Mon Mar 11 11:06:54 2013 Bank is: /home/yaximik/AssRefMap/SC/Ray/RayOutput/AMOS.afg.bnk 0% 100% AFG .................................................. Messages read: 175403161 Objects added: 175403161 Objects deleted: 0 Objects replaced: 0 END DATE: Mon Mar 11 12:13:09 2013 Opening /home/yaximik/AssRefMap/SC/Ray/RayOutput/AMOS.afg.bnk... [160.12s] Indexing Contigs .......... [83.11s] 107326772 reads in 1409913 contigs Scaffold information not available Mates not available:WHAT: Could not open bank file, /home/yaximik/AssRefMap/SC/Ray/RayOutput/AMOS.afg.bnk/FRG.ifo, No such file or directory LINE: 1264 FILE: Bank_AMOS.cc Features not available Initialize Display .Loading AssemblyStats...[8.95s] .Loading Features... [0.01s] .Loading Libraries... [0.00s] .Loading Scaffolds....Loading Contigs... [186.21s] ....Loading NCharts... [21.83s] . [217.01s] Loading Contig 1... [0.05s] 109076 reads Loading reads... [343.52s] Total Load Time: [803.92s] Loading mates .................................................. inserts: 108933 mated: 0 matelisted: 0 unmated: 108933 happy: 0 unhappy: 0 Paint: coverage contigs insetcovfeat readcovfeat features inserts width: 12457 swidth: 778 height: 26357.. Killed [yaximik@G5NNJN1 ~]$
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