Hi All,
this forum is quite usefull for me I hope it will be in the future also
In general I have gtf files from 3 samples - wildtype and 2 more stressed (WT, A, B)) outputs from cufflinks.
I want to know stuff as how is one assembled sequence/gene difference expression trought these 3 points. Ans also top 100 altered genes from WT to A and from A to B etc
Can you suggest me what to use cuffcompare or cuffdiff?
PS - the organism genome is not sequenced!
thanks!
this forum is quite usefull for me I hope it will be in the future also
In general I have gtf files from 3 samples - wildtype and 2 more stressed (WT, A, B)) outputs from cufflinks.
I want to know stuff as how is one assembled sequence/gene difference expression trought these 3 points. Ans also top 100 altered genes from WT to A and from A to B etc
Can you suggest me what to use cuffcompare or cuffdiff?
PS - the organism genome is not sequenced!
thanks!
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