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06-10-2015, 01:33 AM
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#1 |
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Member
Location: Uganda Join Date: Jan 2015
Posts: 71
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plant genomes at NCBI
Dear all,
There are genome sequences for various plants at ftp://ftp.ncbi.nlm.nih.gov/genomes/PLANTS/ which are of interest to me. However I cannot additional information about these sequences. I am more interested in supporting info about Vigna_unguiculata sequences. Your help is welcome. |
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06-10-2015, 02:09 AM
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#2 |
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Senior Member
Location: East Coast USA Join Date: Feb 2008
Posts: 7,080
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Looks like there is only BAC end clones for Vigna: http://vigun.comparative-legumes.org/.
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06-10-2015, 03:52 AM
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#3 |
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Member
Location: Uganda Join Date: Jan 2015
Posts: 71
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I have looked at the link suggested and it appears the cowpea DNA used for BAC library preparation came from a back cross with a virus resistant variety? If that is the case then I think it would suit my purpose since I want to do a customised blast of contigs (from whole transcriptome sequencing) using BAC clones as the database.
Is the Vigna_unguiculata.BES.gz file at ftp site referring to BAC end clones? |
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06-10-2015, 04:04 AM
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#4 |
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Senior Member
Location: East Coast USA Join Date: Feb 2008
Posts: 7,080
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They are BAC clone end sequences.
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| Tags |
| ncbi, plant genomes, plant_sequence data |
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