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Similar Threads
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01-23-2017, 10:28 PM
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#1 |
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Junior Member
Location: india Join Date: Oct 2016
Posts: 9
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Gatk
how to install GATK through terminal in ubuntu?
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01-24-2017, 01:29 AM
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#2 |
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PhD Student
Location: Denmark Join Date: Jul 2012
Posts: 164
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The GATK distribution is a jar file, it should run if you have java installed.
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01-24-2017, 03:34 AM
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#3 |
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Member
Location: Antwerp, Belgium Join Date: Oct 2015
Posts: 97
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The information you are looking for can be found here: https://software.broadinstitute.org/...quickstart.php
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01-25-2017, 01:37 AM
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#4 |
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Junior Member
Location: india Join Date: Oct 2016
Posts: 9
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Gatk
can i input .sam file to GATK in linux??
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01-25-2017, 03:55 AM
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#5 |
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PhD Student
Location: Denmark Join Date: Jul 2012
Posts: 164
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GATK is one of the best documented software in Bioinformatics, are you even making an effort to go to their webpage and reading tutorials or documentation?
Last edited by vivek_; 01-25-2017 at 05:35 AM. |
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01-25-2017, 07:15 AM
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#6 | |
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Member
Location: Antwerp, Belgium Join Date: Oct 2015
Posts: 97
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Quote:
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02-07-2017, 02:58 AM
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#7 |
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Junior Member
Location: india Join Date: Oct 2016
Posts: 9
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error while running
when ever i try to run "java -jar GeomeAnalysis.jar" its showing "unable to access jarfile GenomeAnalysisTK.jar" but when i use "java $GATK -h" gatk environment is coming..please help me in running the tool
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