Equivalent of GNF Symatlas for rna-seq?

kidderb · 06-28-2011, 03:01 PM

I'm wondering if there is a comprehensive database for RNA-Seq data from different mouse tissues similar to what Novartis GNF Symatlas generated? If so, any literature that describes such a database?

thanks

kidderb · 11-02-2012, 11:41 AM

I still haven't been able to find a comprehensive database containing RNA-Seq data for the majority of tissues/cells in mice, similar to what GNF performed using a microarray platform. I found a paper below which contains a few samples, but it would be helpful to identify larger sets of data.

PMID: 22345621
"RNA-Seq Atlas--a reference database for gene expression profiling in normal tissue by next-generation sequencing"

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06-28-2011, 03:01 PM	#1
kidderb Junior Member Location: USA Join Date: Jun 2011 Posts: 3	Equivalent of GNF Symatlas for rna-seq? I'm wondering if there is a comprehensive database for RNA-Seq data from different mouse tissues similar to what Novartis GNF Symatlas generated? If so, any literature that describes such a database? thanks

11-02-2012, 11:41 AM	#2
kidderb Junior Member Location: USA Join Date: Jun 2011 Posts: 3	RNA-Seq database? I still haven't been able to find a comprehensive database containing RNA-Seq data for the majority of tissues/cells in mice, similar to what GNF performed using a microarray platform. I found a paper below which contains a few samples, but it would be helpful to identify larger sets of data. PMID: 22345621 "RNA-Seq Atlas--a reference database for gene expression profiling in normal tissue by next-generation sequencing"