Who is using Genologics LIMs

[james hadfield]

Hi all,

I'd like to find an NGS genologics customer to talk to. Is anyone using Geneus or their new Clarity LIMs? If you are based in Europe so much the better for a phone call!

Feel free to get in touch directly on +44(0)1223 404250

[genbio64]

James,
I sent you an email but we are using that LIMS.

[Jobjohn]

James.

Any thoughts on Clarity LIMS, serious looking at it for NHS diagnostic lab.

We got HiSeq, MiSeq, SOLiD 5500XL, 3730's, 3130's, HT7900, Cobas, Sequenom, Array stuff and a bunch of robots.

Thanks, JD.

[james hadfield]

We have now been using Clarity for six months or so, three-four months for everything NGS in the lab and I'd say its been a success. Now we have everyone in the lab used to using it and users submitting correctly the teething problems are pretty much over.

I'd recommend it for others in my position (especially once we get reporting working well) as it should make life much easier in the long term.

However as a research lab (and with only ilumina seqeuncners integrated) it is difficult to know what else you'd need for a diagnostic lab. Genologics have a CLIA whitepaper on their website which makes for interesting reading. Do let me know what you do? I'd like to get certified for clinical sequncing at some point and might need to ask you questions instead!

[cabrennan]

James,

I saw some of your videos on UTube, Clairity looks pretty nice, but I didn't see anything about the analysis end of the process. Does it allow you to track your analysis too? Versions of software, date run, arguments used, that sort of thing?

Thanks,

Christine

[james hadfield]

Hmm, I'm not sure as I deal very much with the wetlab side. I know we use Clarity as part of our automated analaysis but I believe we get the data out and use an in-house built workflow manager to push the sequencing through the primary pipeline.

After primary analysis (QC, alignment, etc) we hand data over to people for the biological analysis and where they are using pipelines this information is tracked. I'd be pretty confident that in our Bioinformatics core everything is tracked.

[sdarko]

Hi James,

We are looking at ClarityLIMS for a small sequencing core. I'm interested to know how you liking using it an additional ~2 years after your initial post.

Thanks,
Sam

[kmcarr]

Major news regarding GenoLogics

[kmcarr]

Hello all. It has been a while since Illumina BaseSpace ClarityLIMS (nee Genologics) has been discussed and I wanted to see how users are feeling about the direction of the product since Illumina has taken over. I'm also wondering if users have upgraded to ClarityLIMS 5.x or are still using v4.2.x?

If you'd prefer to reply in a private message that's ok by me.

[rekhanshi579]

Those were quite helpful answers.

[KamMothe]

It seems like a stupid question, but who are all the real names of the people on this website. I know that Sordial is Patricia, Radone is Rob, Rancid Twinkie is Evan, MysteriousStranger is Theo and some of the others but I get a little confused. Could we get a list of names?

[dorrismillerrr123]

Originally Posted by james hadfield

Hi all,

I'd like to find an NGS genologics customer to talk to. Is anyone using Geneus or their new Clarity LIMs? If you are based in Europe so much the better for a phone call!

Feel free to get in touch directly on +44(0)1223 404250

These might help you for start -
https://www.ncbi.nlm.nih.gov/pubmed/19997069

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3841808/

https://www.researchgate.net/deref/h...FPMC4281878%2F
And the most comprehensive review summing up and comparing the Illumina's MiSeq and Thermo's PGM - https://www.nature.com/articles/nrg.2016.49

[desmonddez]

sent you a PM

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[Teejay]

sounds good