Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
tophat with/without annotation,and cufflink with annotation? louis7781x Bioinformatics 19 04-05-2013 08:09 AM
Annotation help Sepalous Bioinformatics 1 02-21-2013 01:46 PM
Annotation polijana Bioinformatics 0 02-09-2013 06:48 PM
GO annotation Ramet Bioinformatics 0 09-07-2010 03:14 AM
Annotation johnsequence Bioinformatics 1 02-10-2010 05:02 AM

Thread Tools
Old 12-01-2016, 05:51 AM   #1
Yasmin Lima
Junior Member
Location: Brasília, Brazil

Join Date: Jan 2016
Posts: 2
Default dbNFSP annotation

Hello everyone

I am a beginner in the next generation world.

I have some data to analyze and I am confused about the dbNFSP database annotation...

I can interpret very well the annotation because I can find easy information about the range scores of some algorithms, like PhyloP, LTR, MutationTaster and other. Do they range from 0 to 1, 0 to 10, or what?

I mean, I have a value but I can interpret because I don't know which are the parameters...

I have used Annovar, but the Annovar documentation for these algorithms is very poor in informations about.

Anyone knows where I can find these informations, please?
Yasmin Lima is offline   Reply With Quote
Old 12-01-2016, 07:26 AM   #2
PhD Student
Location: Denmark

Join Date: Jul 2012
Posts: 164

You can get the descriptions from a readme file included in the dbNSFP distribution.
vivek_ is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 11:09 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2021, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO