How can I look up CDS from NCBI

litc · 12-05-2010, 04:51 AM

I want to look up CDS of some species in NCBI, where can I get them?

ntremblay · 12-06-2010, 02:03 PM

I'm not familiar with NCBI,

but you can download pairwise or miltiple alignement from UCSC (ie. http://hgdownload.cse.ucsc.edu/downloads.html#human for human vs other species.)

or

you can visualise those tracks in a genome browser like UCSC genome browser or Vista Browser wich is especially good for inter-specie comparisons,

hope that help,

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12-05-2010, 04:51 AM	#1
litc Member Location: China Join Date: Oct 2010 Posts: 24	How can I look up CDS from NCBI I want to look up CDS of some species in NCBI, where can I get them?

12-06-2010, 02:03 PM	#2
ntremblay Member Location: Montreal, Quebec, Canada Join Date: Dec 2009 Posts: 30	I'm not familiar with NCBI, but you can download pairwise or miltiple alignement from UCSC (ie. http://hgdownload.cse.ucsc.edu/downloads.html#human for human vs other species.) or you can visualise those tracks in a genome browser like UCSC genome browser or Vista Browser wich is especially good for inter-specie comparisons, hope that help,