DNA Methylation Data Analysis Workshop in Berlin (27-30 November 2018)

ecSeq Bioinformatics · 10-02-2018, 01:11 AM

How to use bisulfite-treated sequencing to study DNA methylation
Advance your epigenetics research with NGS methods.

Link to workshop website

In a nutshell

Learn how bisulfite sequencing works
Understand how bisulfite-treated reads are mapped to a reference genome
Perform basic analyses (call methylated regions, perform basic downstream analyses)
Use shell scripting to create reusable data pipelines
Visualize results (ready-to-publish)

The purpose of this workshop is to get a deeper understanding of the use of bisulfite-treated DNA in order to analyze the epigenetic layer of DNA methylation. Advantages and disadvantages of the so-called 'bisulfite sequencing' and its implications on data analyses will be covered. The participants will be trained to understand bisulfite-treated NGS data, to detect potential problems/errors and finally to implement their own pipelines. After this course they will be able to analyze DNA methylation and create ready-to-publish graphics.

By the end of this workshop the participants will:

be familiar with the sequencing method of Illumina
understand how bisulfite sequencing works
be aware of the mapping problem of bisulfite-treated data
understand how bisulfite-treated reads are mapped to a reference genome
be familiar with common data formats and standards
know relevant tools for data processing
automate tasks with shell scripting to create reusable data pipelines
perform basic analyses (call methylated regions, perform basic downstream analyses)
plot and visualize results (ready-to-publish)
be able to reuse all analyses

More information here

ecSeq Bioinformatics · 09-16-2020, 09:02 AM

:: Final Call ::

Similar Threads
Thread	Thread Starter	Forum	Replies	Last Post
Trinity Workshop (Berlin, 11-15 June 2018)	Physalia-courses	Bioinformatics	0	04-30-2018 02:25 AM
Trinity Workshop (Berlin, 11-15 June 2018)	Physalia-courses	RNA Sequencing	0	04-30-2018 02:15 AM
Epigenomics Workshop in Berlin (28th May-1st June 2018)	Physalia-courses	Events / Conferences	1	04-11-2018 12:51 AM
2nd Berlin Summer School in NGS Data Analysis 2018	ecSeq Bioinformatics	Bioinformatics	2	03-27-2018 04:41 AM
RNA-seq workshop: Library Preparation and Introduction to Data Analysis; November	DNATECH	Events / Conferences	0	09-26-2016 07:55 PM

10-02-2018, 01:11 AM	#1
ecSeq Bioinformatics Senior Member Location: Leipzig, Germany Join Date: May 2012 Posts: 271	DNA Methylation Data Analysis Workshop in Berlin (2-5 November 2020) How to use bisulfite-treated sequencing to study DNA methylation Advance your epigenetics research with NGS methods. Link to workshop website In a nutshell Learn how bisulfite sequencing works Understand how bisulfite-treated reads are mapped to a reference genome Perform basic analyses (call methylated regions, perform basic downstream analyses) Use shell scripting to create reusable data pipelines Visualize results (ready-to-publish) The purpose of this workshop is to get a deeper understanding of the use of bisulfite-treated DNA in order to analyze the epigenetic layer of DNA methylation. Advantages and disadvantages of the so-called 'bisulfite sequencing' and its implications on data analyses will be covered. The participants will be trained to understand bisulfite-treated NGS data, to detect potential problems/errors and finally to implement their own pipelines. After this course they will be able to analyze DNA methylation and create ready-to-publish graphics. By the end of this workshop the participants will: be familiar with the sequencing method of Illumina understand how bisulfite sequencing works be aware of the mapping problem of bisulfite-treated data understand how bisulfite-treated reads are mapped to a reference genome be familiar with common data formats and standards know relevant tools for data processing automate tasks with shell scripting to create reusable data pipelines perform basic analyses (call methylated regions, perform basic downstream analyses) plot and visualize results (ready-to-publish) be able to reuse all analyses More information here __________________ ecSeq Bioinformatics is Europe’s leading provider of hands-on bioinformatics workshops and professional data analysis in the field of Next-Generation Sequencing (NGS). Last edited by ecSeq Bioinformatics; 09-16-2020 at 08:59 AM.

09-16-2020, 09:02 AM	#2
ecSeq Bioinformatics Senior Member Location: Leipzig, Germany Join Date: May 2012 Posts: 271	:: Final Call :: __________________ ecSeq Bioinformatics is Europe’s leading provider of hands-on bioinformatics workshops and professional data analysis in the field of Next-Generation Sequencing (NGS).