SEQanswers

Go Back   SEQanswers > Applications Forums > De novo discovery



Similar Threads
Thread Thread Starter Forum Replies Last Post
GeneProf - Next-Gen Analysis for Next-Gen Data florian Bioinformatics 0 01-30-2012 02:21 AM
RNA-Seq: Full-length transcriptome assembly from RNA-Seq data without a reference gen Newsbot! Literature Watch 7 10-26-2011 05:37 AM
Chromosome distribution of RNA seq data lintianfeng Bioinformatics 1 09-30-2011 07:05 AM
next gen data NicoBxl General 1 12-19-2010 09:18 AM
Managing next gen data, HELP! rdeborja Bioinformatics 1 07-29-2010 07:08 AM

Reply
 
Thread Tools
Old 08-30-2010, 03:16 AM   #1
Linnea
Member
 
Location: Uppsala, Sweden

Join Date: Mar 2010
Posts: 23
Question Chromosome assembly with next-gen data?

Hey all,

I've just seen that the Turkey and Panda genomes (assembled from 454+Illumina reads and only Illumina reads respectively) now are up on Pre Ensembl with complete chromosomes.

The Panda assembly consists of over 80,000 scaffolds, and I would very much like to know how they've assigned each scaffold to a certain chromosome, and also how they can know the internal order of the scaffolds in each chromosome. Does anyone have a clue??

I'm assembling a large genome myself, but with 100,000 scaffolds and a linkage map with only 200 sites I have no idea how to get full chromosome sequences..

Any help would be appreciated!
Linnéa
Linnea is offline   Reply With Quote
Reply

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 03:58 PM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO