Go Back   SEQanswers > General

Similar Threads
Thread Thread Starter Forum Replies Last Post
Comparing mouse and human differentially expressed genes stephenhart General 3 11-16-2011 01:14 AM
Comparing detected genes. Coords for probesets of Affy GeneChip Mouse 430 2.0 Array. Azazel Bioinformatics 1 04-11-2011 01:55 AM
Annovar, not downloading refGeneMrna.fa ketan_bnf Bioinformatics 0 01-14-2011 06:50 PM
downloading GOSeq R package issues RockChalkJayhawk Bioinformatics 6 06-30-2010 06:09 PM
PubMed: Transcriptome-wide identification of novel imprinted genes in neonatal mouse Newsbot! Literature Watch 0 12-05-2008 05:02 AM

Thread Tools
Old 05-09-2011, 06:51 PM   #1
Location: Australia

Join Date: Aug 2010
Posts: 54
Default Downloading all mouse genes and up/downstream seuences

Hi Everyone,

I am not sure if the question fits here.
I want to download all the known genes of Mouse with 5000bp upstream and downstream sequences.
Is there any particular databases or any programs/scripts that can do that for me?
Thanks a lot for any help.

fahmida is offline   Reply With Quote
Old 05-09-2011, 10:11 PM   #2
Location: Uppsala, Sweden

Join Date: Mar 2010
Posts: 23

Check out Ensembl BioMart:

You can choose if you want coding sequence, exons, cDNA, flanking regions etc. Then just click on results Can take up to some hours, but no scripting is needed!
Linnea is offline   Reply With Quote
Old 05-10-2011, 03:25 AM   #3
Senior Member
Location: Boston

Join Date: Nov 2009
Posts: 224

The UCSC Table Browser also works well for this purpose.
pbluescript is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 10:24 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO