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Old 05-09-2011, 06:51 PM   #1
fahmida
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Location: Australia

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Default Downloading all mouse genes and up/downstream seuences

Hi Everyone,

I am not sure if the question fits here.
I want to download all the known genes of Mouse with 5000bp upstream and downstream sequences.
Is there any particular databases or any programs/scripts that can do that for me?
Thanks a lot for any help.

Regards.
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Old 05-09-2011, 10:11 PM   #2
Linnea
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Check out Ensembl BioMart:

http://www.ensembl.org/biomart/martv...5a6b8d132e9d21

You can choose if you want coding sequence, exons, cDNA, flanking regions etc. Then just click on results Can take up to some hours, but no scripting is needed!
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Old 05-10-2011, 03:25 AM   #3
pbluescript
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The UCSC Table Browser also works well for this purpose.
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