Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
ChIP-Seq: Picking ChIP-seq peak detectors for analyzing chromatin modification experi Newsbot! Literature Watch 1 06-14-2012 04:31 AM
ChIP-Seq: PeakRanger: A cloud-enabled peak caller for ChIP-seq data. Newsbot! Literature Watch 0 05-11-2011 03:40 AM
ChIP-Seq: Rapid innovation in ChIP-seq peak-calling algorithms is outdistancing bench Newsbot! Literature Watch 0 11-10-2010 02:40 AM
Long peak length from ChIP-seq data Chiper Epigenetics 12 03-17-2010 03:08 PM
Long peak length from ChIP-seq data Chiper SOLiD 1 12-25-2009 10:20 PM

Thread Tools
Old 08-11-2011, 09:37 AM   #1
Junior Member
Location: United Kingdom

Join Date: Apr 2011
Posts: 4
Default ChIP-seq peak length varies from 0 to 381

Hi all,

I am new to NGS data analysis. Recently I received my first ChIP-seq data.
Sequencing was done on SOLiD4 and mapping as well as peak calling done on CLC Genomics workbench. The 768 were peaks were called with lengths ranging from 0 to 381. There were 30 peaks with 0 length and several others had length from 1-30. I don't know what to do with the peaks of such a low length. I would be grateful to you, if you could answer some my questions.

1. What could be the reason behind this?
2. Can I use this data for further analysis like finding the closest genes, motif analysis etc.
rahulr1485 is offline   Reply With Quote

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 08:24 PM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO