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Old 12-23-2011, 12:07 PM   #1
ahli1981
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Default ask for files for annotation

Hello, could anyone tell me how to get the data files for annotation, like the coordinates of exon, intron, and intergenic region, the reference genome genotype, etc.

I looked at ftp of UCSC, but there are so many files there, without a detailed description of the files.
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Old 12-24-2011, 09:38 AM   #2
RDW
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For detailed descriptions of the UCSC annotation data, try 'describe table scheme' in the Table Browser:

http://genome.ucsc.edu/cgi-bin/hgTables

There might be easier ways of retrieving and using the annotation, depending on what you need it for, e.g. for annotating sequence variants:

http://www.openbioinformatics.org/annovar/
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