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Old 01-02-2012, 07:56 AM   #1
avinash
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Default split read SV identification

Could anyone suggest a good tool to identify indels/SVs based on split-reads (like the ones generated by bwa-sw).
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Old 01-02-2012, 10:56 AM   #2
Heisman
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Pindel should be helpful.
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Old 01-03-2012, 11:53 AM   #3
avinash
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Thank you Heisman. I will try that.
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bwa, indel, split reads, structural variations

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