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Old 07-16-2013, 10:54 AM   #1
nupurgupta
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Location: New Jersey

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Default bwa-mem and quality trimming

I want to switch from using bwa aln+sampe to bwa-mem, but I notice that there is no quality soft-trimming in the latter. (It is present in bwa aln). Am I missing something? Why has it not been included? Is there any other way to do this? Thanks!
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