Go Back   SEQanswers > Bioinformatics > Bioinformatics

Similar Threads
Thread Thread Starter Forum Replies Last Post
BWA-MEM and X0/X1/etc flags mturchin20 Bioinformatics 5 07-15-2015 06:54 AM
bwa mem segfault; bwa bwasw breaks MarkDuplicates ElenaN Bioinformatics 2 06-30-2013 10:23 PM
bwa mem -R option dakin Bioinformatics 2 05-02-2013 07:42 AM
bwa quality trimming and samtools rmdup greigite Bioinformatics 7 02-22-2013 03:22 AM
BWA errors after quality trimming flipwell Bioinformatics 3 05-21-2012 07:39 PM

Thread Tools
Old 07-16-2013, 10:54 AM   #1
Location: New Jersey

Join Date: Aug 2010
Posts: 29
Default bwa-mem and quality trimming

I want to switch from using bwa aln+sampe to bwa-mem, but I notice that there is no quality soft-trimming in the latter. (It is present in bwa aln). Am I missing something? Why has it not been included? Is there any other way to do this? Thanks!
nupurgupta is offline   Reply With Quote

bwa, quality trimming

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off

All times are GMT -8. The time now is 05:05 AM.

Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO