SEQanswers

Go Back   SEQanswers > Bioinformatics > Bioinformatics



Similar Threads
Thread Thread Starter Forum Replies Last Post
differential expression analysis in non-model species - best practice? evt8 RNA Sequencing 2 12-08-2015 11:22 PM
How to fully use the list of DEGs in non model species? jack Ip Bioinformatics 1 07-16-2015 07:41 PM
Experimental design for RNA-seq in a non-model plant species giuseppepuglia RNA Sequencing 0 01-18-2015 02:14 PM
How to do gene expression analysis in Arraystar (DNAstar) for non-model species qingdaoalbert RNA Sequencing 0 07-18-2013 06:20 AM

Reply
 
Thread Tools
Old 02-03-2016, 07:36 AM   #1
Genomics101
Member
 
Location: Maryland, USA

Join Date: May 2012
Posts: 60
Default Computational Karyotyping of non-model species genomes

Greetings.

I have some nice long read data for a diploid animal. There are no references species or even genera in this group and the karyotypes vary widely (from 12 to 50+ chromosomes).

Is there a way to get an estimate just using a de novo assembly of the number of chromosomes in this organism?
Genomics101 is offline   Reply With Quote
Reply

Tags
de novo assembly, karyotype, non-model organism

Thread Tools

Posting Rules
You may not post new threads
You may not post replies
You may not post attachments
You may not edit your posts

BB code is On
Smilies are On
[IMG] code is On
HTML code is Off




All times are GMT -8. The time now is 07:02 AM.


Powered by vBulletin® Version 3.8.9
Copyright ©2000 - 2020, vBulletin Solutions, Inc.
Single Sign On provided by vBSSO