Hello, Everyone,
I want to extrcate some information from the output file of NonoAlign mapping tool, the output file format is FASTQ format, it likes this:
@HWUSI-EAS1522 100625:1:1:1290:9446 # 0/1
CGTCTCGTCTCGTCTCGTCTCGTCTCGTCTCGTCTA
################################ QC
I have 2 questions:
*The first question is what's the detail meaning of number in the first line (HWUSI-EAS1522 100625:1:1:1290:9446 # 0/1)?
* The other question is how can I get the tab-separated files without headers containing four coulumns( 1 chr of reads; 2 the start position of the mapped read; 3 the stop position of the mapped read; 4 the strand information) which were extrcated from the output files of NovoAlign mapping tools.
Thank you very much!
qc.share
I want to extrcate some information from the output file of NonoAlign mapping tool, the output file format is FASTQ format, it likes this:
@HWUSI-EAS1522 100625:1:1:1290:9446 # 0/1
CGTCTCGTCTCGTCTCGTCTCGTCTCGTCTCGTCTA
################################ QC
I have 2 questions:
*The first question is what's the detail meaning of number in the first line (HWUSI-EAS1522 100625:1:1:1290:9446 # 0/1)?
* The other question is how can I get the tab-separated files without headers containing four coulumns( 1 chr of reads; 2 the start position of the mapped read; 3 the stop position of the mapped read; 4 the strand information) which were extrcated from the output files of NovoAlign mapping tools.
Thank you very much!
qc.share
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