Hi all,
I am a total beginner with bioinformatics, and I am supposed to build a hash table. I have been reading up on everything (stampy, shell scripts, etc.), but nowhere can I find simple guidlines on how to build a hash table. Yes, I know the code to use to execute the command in Python; I just need to know how do I figure out what length to use for k-mers, etc.
We have many short reads from Illumina MiSeq, and I built a genome already, based on Genbank data.
I am getting nowhere anymore with searching the Internet, so I would really appreciate some help.
Thanks!
I am a total beginner with bioinformatics, and I am supposed to build a hash table. I have been reading up on everything (stampy, shell scripts, etc.), but nowhere can I find simple guidlines on how to build a hash table. Yes, I know the code to use to execute the command in Python; I just need to know how do I figure out what length to use for k-mers, etc.
We have many short reads from Illumina MiSeq, and I built a genome already, based on Genbank data.
I am getting nowhere anymore with searching the Internet, so I would really appreciate some help.
Thanks!
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