For ASE test, we do binomial test for each heterozygous SNP to see wheather it's ASE.
But Some transcripts will have more than one heterozygous SNP. However we tests each SNP independently. Is there any (...manageable) way to test if this gene is ASE?
But Some transcripts will have more than one heterozygous SNP. However we tests each SNP independently. Is there any (...manageable) way to test if this gene is ASE?