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  • Metagenomics/ Number of paired end reads in metasim

    Hi,

    I am trying to predict some parameters so that I could go ahead and simulate a metagenome (consisting of 100 genomes). I am using metasim with Illumina Miseq platform, read length 200bp. I am little bit confused about the number of paired end reads which I should put in metasim. The main idea being, when I assemble reads, I am aiming for good contig length distribution (> 2000bp).

    Any help would be greatly appreciated.

    Thanks
    Ashwani

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