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Old 01-29-2010, 12:58 PM   #1
Junior Member
Location: philly

Join Date: Mar 2009
Posts: 2
Default software search?

Hi everyone,

Do you know any software enabling to make a stack height profile for all
continuous regions covered by extended tags with estimated DNA
fragment length regardless of paired ends or not, rather than calling
peaks? or just generate a coverage profile for all extended tags?

nucleosome is offline   Reply With Quote
Old 01-31-2010, 12:18 AM   #2
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Location: Sweden

Join Date: Mar 2008
Posts: 324

Try FindPeaks, it is good at making wiggles.
Chipper is offline   Reply With Quote

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