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Old 01-30-2016, 09:15 AM   #1
tjf516
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Location: United Kingdom

Join Date: Jan 2016
Posts: 1
Exclamation MEGAN - changing query coverage?

Hello,

Does anyone know if it is possible to change the parameters in MEGAN to only consider fragments with 100% query coverage?

When attempting the change the LCA parameters I cannot find an option to do so. I understand that the bit-score takes into account query coverage, so does anyone know how to adjust the bit-score value to only consider sequences with high query coverage?

Any help would be much appreciated!

Thanks
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