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  • Environment setting related to GSL!

    Hello!

    While I was trying to install the BIOS of RSEQtools package according to the documentation I got confused about the environment settings, which says:
    Code:
    Step 1: Download BIOS.
    
    Step 2: Other requirements: GNU Scientific Library
    
    Step 3: Set the environment variables:
      - BIOINFOCONFDIR=/pathTo/bios/conf
      - BIOINFOGSLDIR=/pathTo/gsl-X.XX
    
    Step 4: Compiling BIOS:
      make
      make prod
    
    Optional: Doxygen (version 1.5.7.1) is used to document the code.
    The following environment variables are required:
    - BIOINFODOXYGENBINDIR=/pathTo/doxygen-1.5.7.1/bin
    - BIOINFODOXYGENDOCDIR=/pathTo/public_html/bios
    - BIOINFOWEBSERVER=webServer.org
    My desktop is Ubuntu Natty (11.04) on Linux kernel 2.6.38.11-server with GNOME 2.32.1. I assume both the "GNU Scientific Library" and Doxygen have been installed as I found following packages are there with my synaptic package manager:
    Code:
    libgsl0-dev  1.14+dfsg-1
    libgsloldbl   1.14+dfsg-1
    doxygen      1.7.3-6ubuntu
    But I could not locate the files in a similar format as gsl-1.14 and /doxygen-1.7.3/bin in the file system when I tried to set the environment variables. My questions are:

    1) Do I still need to set the environment variables with my system?
    2) For my situation, how do I get the correct environment variables if needed?
    3) I assume the environment variables are put in my /etc/bash.bashrc file. Is this correct? If yes, how?

    Please forgive me if these questions are too naive as I am beginner. Have asked the author, but no response.

    Thank you in advance!

    Yifang

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