yes, I think..see the link from where I got those files
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I think the fasta file is in fasta format, as when I open it in texteditor, the first few lines looks like this
>1
CCCTAAACCCTAAACCCTAAACCCTAAACCTCTGAATCCTTAATCCCTAAATCCCTAAATCTTTAAATCC
TACATCCATGAATCCCTAAATACCTAATTCCCTAAACCCGAAACCGGTTTCTCTGGTTGAAAATCATTGT
GTATATAATGATAATTTTATCGTTTTTATGTAATTGCTTATTGTTGTGTGTAGATTTTTTAAAAATATCA
TTTGAGGTCAATACAAATCCTATTTCTTGTGGTTTTCTTTCCTTCACTTAGCTATGGATGGTTTATCTTC
ATTTGTTATATTGGATACAAGCTTTGCTACGATCTACATTTGGGAATGTGAGTCTCTTATTGTAACCTTA
GGGTTGGTTTATCTC,
when i open this file in the terminal it looks
cat Arabidopsis_thaliana_NCBI_TAIR10/Arabidopsis_thaliana/NCBI/TAIR10/Sequence/Bowtie2Index/genome.fa
XSym
0029
7ec8fcfa270da919afc1f0afd221e788
../WholeGenomeFasta/genome.fa
so fasta file seems to be good
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Originally posted by hathiram2 View Postcat Arabidopsis_thaliana_NCBI_TAIR10/Arabidopsis_thaliana/NCBI/TAIR10/Sequence/Bowtie2Index/genome.fa
XSym
0029
7ec8fcfa270da919afc1f0afd221e788
../WholeGenomeFasta/genome.fa
so fasta file seems to be good
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libz warning?
Originally posted by dpryan View PostThe libz warning can be ignored. I've not seen that particular error, but the source code suggests that the fasta file doesn't start with a ">Something" line. Is this the case?
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