I have WGS sequence of illumina paired-end reads (2x101 bp) of the plant crop. I have de novo assembled the reads using velvet.
I would like to do two things
1. To do de novo genome assembly and identify repetitive sequences. I know i can do with repeat masker, is there any software other than this?
2.Remove prior repetitive sequence from illumina reads and do de novo assembly.
Please let me know software to find repetitive sequence before assembly and after assembly.
I would like to do two things
1. To do de novo genome assembly and identify repetitive sequences. I know i can do with repeat masker, is there any software other than this?
2.Remove prior repetitive sequence from illumina reads and do de novo assembly.
Please let me know software to find repetitive sequence before assembly and after assembly.
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