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Old 12-02-2011, 01:23 PM   #1
ahli1981
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Default How to know the CDS positions of each gene

Anyone knows how to get the CDS position of each gene, on HG18?

Note that it is for each gene, instead of each transcript
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Old 12-03-2011, 06:03 PM   #2
louis7781x
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Quote:
Originally Posted by ahli1981 View Post
Anyone knows how to get the CDS position of each gene, on HG18?

Note that it is for each gene, instead of each transcript
gene expression is equal to CDS of transcript. You need to see information of each transcript of gene.
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Old 12-03-2011, 07:55 PM   #3
robs
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You should be able to get them from the UCSD Genomes browser tables (http://genome.ucsc.edu/cgi-bin/hgTables?command=start).
Alternatively, you can extract the information from the annotations available at the NCBI FTP (ftp://ftp.ncbi.nih.gov/genomes/H_sap...romosomes/gbs/). I should note that those annotations are not for the HG18 version, but the latest release.
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Old 12-19-2011, 01:29 PM   #4
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thanks robs
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