Hi
I have a very simple question regarding the velvetg command, I really don't know what to provide in the ins_length parameter. My Reads were produced with a HiSeq instrument and are 150nt in length, and the average gDNA fragment size: 400-500nt (range from 150bp to 900bp). I noticed that the reads the example in the metavelvet webpage are 100 bp but then they specify 260 as their ins_length parameter. Also if I let velvetg determine ins_length for me , should I still write that argument in script and just complement with auto?
I'd really appreciate your help, as this is not straight forward from the manual or from web-page and it's the first time I deal with this data.
Thanks
Andy
I have a very simple question regarding the velvetg command, I really don't know what to provide in the ins_length parameter. My Reads were produced with a HiSeq instrument and are 150nt in length, and the average gDNA fragment size: 400-500nt (range from 150bp to 900bp). I noticed that the reads the example in the metavelvet webpage are 100 bp but then they specify 260 as their ins_length parameter. Also if I let velvetg determine ins_length for me , should I still write that argument in script and just complement with auto?
I'd really appreciate your help, as this is not straight forward from the manual or from web-page and it's the first time I deal with this data.
Thanks
Andy
Comment