I am trying to perform an alignment of a fastq file using bowtie.
bowtie -q -p 8 -v 3 -a -m 600 --best --strata /inputfolder/inputFILE.fq
I get the following error:
No query or output file specified!
I also tried the following:
bowtie -q /inputfolder/inputFILE.fq -p 8 -v 3 -a -m 600 --best --strata
and received the same message.
I'm not sure what I am doing wrong but I feel like it's something very simple. Any help would be greatly appreciated.
bowtie -q -p 8 -v 3 -a -m 600 --best --strata /inputfolder/inputFILE.fq
I get the following error:
No query or output file specified!
I also tried the following:
bowtie -q /inputfolder/inputFILE.fq -p 8 -v 3 -a -m 600 --best --strata
and received the same message.
I'm not sure what I am doing wrong but I feel like it's something very simple. Any help would be greatly appreciated.
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