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Old 08-27-2014, 07:36 PM   #1
kadiri.sreenu
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Location: india

Join Date: Aug 2014
Posts: 5
Default SOAPdenovo

Hi to every one.This is sreenu kadiri.
I need to use S0APdenovo for assembling as contigs and scaffole.so i have downloaded the software from source code and saved in desktop of suse linux 64 bit architecture as tgz archieve file.when i am trying to unpack the archieve instructed by SOAPdenovo website using tar -zxf ${destination folder} it is showing error like bad substitution. can any one give solution and how install SOAPdenovo2.
thank you.
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Old 08-28-2014, 02:53 AM   #2
GenoMax
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If you are new to command line you should download the pre-compiled binary version from this location: http://sourceforge.net/projects/soap...ovo2/bin/r240/. That would allow you to run it immediately once you untar the archive.
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Old 09-06-2014, 10:05 AM   #3
kadiri.sreenu
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hi genomax sir,

as u suggested i tried to install with this http://sourceforge.net/projects/soap...ovo2/bin/r240/ but still i didnt install it due to following error.

/usr/lib64/gcc/x86_64-suse-linux/4.1.0/../../../../x86_64-suse-linux/bin/ld: un recognized option '--hash-style=both'
/usr/lib64/gcc/x86_64-suse-linux/4.1.0/../../../../x86_64-suse-linux/bin/ld: use the --help option for usage information
collect2: ld returned 1 exit status
make: *** [SOAPdenovo-63mer] Error 1

I am using suse linux 10 vertion and having old vertions of gnu,glibc and binutils.
is old vertions are the reason for the above problem.
how to solve this problem.
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Old 09-06-2014, 04:59 PM   #4
GenoMax
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If you had downloaded the precompiled linux binary they you would not need to "install/make" the program. I think you downloaded the file that has the word "src" in the file name.

Instead download this file: http://sourceforge.net/projects/soap...0.tgz/download
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